Publications 2013

  1. In situ sequencing for RNA analysis in preserved tissue and cells.
    Ke R, Mignardi M, Pacureanu A, Svedlund J, Botling J, Wählby C, Nilsson M.
    Nat Methods. 2013 Aug;10(9):857-60.
  2. Conformational landscapes of DNA polymerase I and mutator derivatives establish fidelity checkpoints for nucleotide insertion.
    Hohlbein J, Aigrain L, Craggs TD, Bermek O, Potapova O, Shoolizadeh P, Grindley ND, Joyce CM, Kapanidis AN.
    Nat Commun. 2013 Jul 8;4:2131.
  3. Single-molecule DNA repair in live bacteria
    Uphoff S, Reyes-Lamothe R, Garza de Leon F, Sherratt DJ, Kapanidis AN.
    Proc Natl Acad Sci U S A. 2013 May 14;110(20):8063-8.
  4. A tissue-like printed material
    Villar G, Graham AD, Bayley H.
    Science. 2013 Apr 5;340(6128):48-52.
  5. Integrated view of genome structure and sequence of a single DNA molecule in a nanofluidic device
    Marie R, Pedersen JN, Bauer DL, Rasmussen KH, Yusuf M, Volpi E, Flyvbjerg H, Kristensen A, Mir KU.
    Proc Natl Acad Sci U S A. 2013 Mar 26;110(13):4893-8.
  6. The transcription bubble of the RNA polymerase-promoter open complex exhibits conformational heterogeneity and millisecond-scale dynamics: implications for transcription start-site selection
    Robb NC, Cordes T, Hwang LC, Gryte K, Duchi D, Craggs TD, Santoso Y, Weiss S, Ebright RH, Kapanidis AN.
    J Mol Biol. 2013 Mar 11;425(5):875-85.
  7. In situ detection of individual mRNA molecules and protein complexes or post-translational modifications using padlock probes combined with the in situ proximity ligation assay
    Weibrecht I, Lundin E, Kiflemariam S, Mignardi M, Grundberg I, Larsson C, Koos B, Nilsson M, Söderberg O.
    Nat Protoc. 2013 Feb;8(2):355-72.
  8. Kinetics of diffusion-mediated DNA hybridization in lipid monolayer films determined by single-molecule fluorescence spectroscopy
    Hannestad JK, Brune R, Czolkos I, Jesorka A, El-Sagheer AH, Brown T, Albinsson B, Orwar O.
    ACS Nano. 2013 Jan 22;7(1):308-15.
  9. Non-covalent single transcription factor encapsulation inside a DNA cage
    Crawford R, Erben CM, Periz J, Hall LM, Brown T, Turberfield AJ, Kapanidis AN.
    Angew Chem Int Ed Engl. 2013 Feb 18;52(8):2284-8.
  10. High-specificity single-tube multiplex genotyping using Ribo-PAP PCR, tag primers, alkali cleavage of RNA/DNA chimeras and MALDI-TOF MS
    Mauger F, Gelfand DH, Gupta A, Bodepudi V, Will SG, Bauer K, Myers TW, Gut IG.
    Hum Mutat. 2013 Jan;34(1):266-73.
  11. From next-generation sequencing alignments to accurate comparison and validation of single-nucleotide variants: the pibase software.
    Forster M, Forster P, Elsharawy A, Hemmrich G, Kreck B, Wittig M, Thomsen I, Stade B, Barann M, Ellinghaus D, Petersen BS, May S, Melum E, Schilhabel MB, Keller A, Schreiber S, Rosenstiel P, Franke A.
    Nucleic Acids Res. 2013 Jan 7;41(1):e16.